Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015925999.1_cds_XP_016474116.1_66176
CDS Infomation

[gene=LOC107795926] [db_xref=GeneID:107795926] [protein=DExH-box ATP-dependent RNA helicase DExH3-like isoform X2] [protein_id=XP_016474116.1] [location=join(20755..20876,22520..22646,23275..23429,23520..23607,23894..24130,26064..26159,26748..26936,27229..27388,27473..27603,28202..28372,33808..34080,35227..35421,36919..37122,42517..42586,48100..48248,52096..52404,52498..52557,56303..56455,56554..56664,71591..72055)] [gbkey=CDS]
Sequence

ATGTACCGGATTCGAATTTTCGTTGGTTGGGACAGCAGCGTGGGTTTTGTAGATACCCTG
CTACCGCCGCGTTGGAGCAATTCTCCGACGATGAATATGAATGCGACTACGAAAATCATC
CGAAGAGGAGGTACAATGATGCAAAGACCTTTTGATGAGGAGGAAATTTTGGCAGTGATC
AAATTCTACTATGGGGATAAAGTTCCAGCGTTCGTATGGCTTCACTATGAAATTCTACAA
AAACTGGTGGCTTCATCATCAGTGGCCAATATAGACGAGTGGAAATGGAAACTTAGTCTG
CTGCTGCGTAATGAAAAGAACCAAGAAGTTGTATCCAGAGATAAGAGGGATAGAAGAGAC
TATGAGCAGATATCTAACCTTGCCAAAAGGATGGGTCTCTATAGTGAAATTTATGGAAAA
GTTGTAGTGGTGAGCAAGGTTCCTCTTCCAAATTATAGACCCGATCTTGATGATAAGCGG
CCTCAAAGAGAGGTAGTAATCCCACTAAGTTTGCAAAGGAGAGTAGAAGGCTTGCTTCAG
GAGCATATTGATAGAACACAGCTCATTAGTGGAAAAGCTGACAACATTTTAGATGGAACA
AACTCCTCTGATATGGTTGAAGATGCGAACTTGGATGAAAATCCAGATTCATTCTTAGAT
GGCTCTGTCATGGAGAAGGTTCTTCAGAGGCGGAGCTTACGCATGCGTAATATGCAGAGG
GCTTGGCAGGAATCTCCTGATGGCAACAAAATGCTAGAATTCCGGAAATCTCTTCCTGCA
TTTAAGGAAAAGGAAAGGTTGCTCCAAGCAATTGCACGTAATCAGGTGGTAGTAATTTCT
GGCGAGACAGGATGTGGTAAGACCACTCAACTGCCACAGTACATTCTAGAGTCAGAAATA
GAATCTGGCCGTGGAGCATTTTGTAGCATAATTTGTACACAGCCTCGAAGAATATCTGCT
TTGGCGGTTGCAGAAAGAGTGTCTACAGAGAGGGGAGAACCTCTTGGTGACTCAGTGGGC
TACAAAGTACGATTAGAAGGGGTGAAAGGAAAAAATACACATTTACTATTTTGCACGAGT
GGTATTTTGCTTCGTCGTCTTCTCAGTGACCGCAATCTTGATGGTATAACCCATGTTTTC
GTTGATGAGATTCATGAGCGAGGCATGAATGAAGACTTCCTGTTGATTGTGTTGAAGGAT
CTTCTTCCACGACGCCCAGATTTGAGATTGATTTTGATGAGTGCTACTCTTAATGCTGAA
TTATTTTCCAGTTACTTTGGAGGGGCTCCAATGATTCATATCCCAGGCTTCACATATCCT
GTAAGAGCGCATTTTCTGGAAGATTTGCTGGAAATAACAGGGTATAAGTTGACTTCGTTC
AACCAAATTGATGATTATGGTCAGGAGAAGATGTGGAAAACACAAAAACAGTTAGCACCT
CGCAAAAAGAAAAATCAGATAACTGCTCTTGTTGAGGATGCTCTAAACAAATCAAACTTC
GAGAGTTATAGTGCAAGGGCACGTGATTCATTAGCATGCTGGGCTCCTGATTGTATTGGA
TTCAATCTTATTGAGGCAGTTTTGTGCCACATATGTCGAAAAGAACGTCCAGGTGCTGTA
CTAGTATTTATGACTGGTTGGGAAGATATTAGTTGTTTAAGAGATCAGCTTAAAGCCCAT
CCTCTCTTGGGAGACCCAAATAGAGTGTTGTTGCTCACTTGTCATGGTTCTATGGCAACC
TCTGAGCAGAAACTCATATTTGAGAAGGCACCTCAGAATGTACGTAAAATAGTACTTGCA
ACAAACATGGCCGAGGCAAGTATTACTATAAATGATGTAGTCTTTGTAGTGGACTGTGGA
AAAGCGAAGGAGACAACTTATGACGCGCTAAATAATACTCCATGTTTATTACCTTCATGG
ATTTCACAAGCCTCTGCCCGACAAAGAAGGGGCAGGGCTGGCCGCGTGCAACCAGGCGAG
TGTTACCATTTATATCCACGATGTGTTTATGAAGCTTTTGCTGAATATCAACTACCTGAA
CTCCTGAGAACTCCTTTGAATTCTCTTTGCTTGCAAATAAAGAGTTTGCAGGTTGGAAGT
ATTGCTGAATTTCTATCAGCTGCTCTTCAGCCGCCAGAACCATTGGCTGTGCAAAATGCT
ATTCAGTTTTTGAAGATGATTGGTGCATTAGATGAAAATGAGTATCTTACACATCTAGGA
AAGTTTTTAGCAATTCTCCCGGTGGATCCCAAGCTTGGGAAAATGCTCATTATGGGTGCT
ATTTTCCGTTGCTTCGATCCTGTATTGACTATAGTGGCTGGTCTTAGTGTGCGGGATCCT
TTTCTATTGCCTCAAGACAAAAAGGATTTAGCGGGGACTGCAAAGTCTAGATTCTCAGCA
AAAGACTATAGTGACCATATGGCGCTTGTCCGTGCATATGAAGGATGGAAAGATGCTGAA
AGGGAAGGTTCTGCCTACGAATACTGCTGGAGGAATTTCCTCTCTGCCCAGACTCTTCAA
GCTATCCATTCTCTTAGAAAGCAATTTATCTTCATCTTGAAAGATGCTGGATTGCTTGAT
GCTGATACTGCAACTAACAATAAACTAAGTTACAATCAGTCTTTGGTTCGTGCTGTCATA
TGTTCTGGCTTGTATCCTGGAATTGCATCGGTGGTGCACAGAGAGACATCAATGTCCTTC
AAGACTATGGATGATGGACAAGTCTTGCTTTATGCTAATTCAGTCAATGCTCGTTATCAA
ACGATTCCATACCCTTGGTTGGTGTTTGGTGAAAAAGTGAAGGTCAATACAGTCTTCATA
CGAGATTCTACTGGAGTATCTGATTCGATTGTGATCCTATTTGGTAGTACTCTTGACAGC
GGAGATACGGCTGGGCATTTAAAGATGTTGGGTGGATACATAGAGTTCTTCATGGATCCT
ACTCTAGCAGATTGCTACATAAAGCTCAAAGAGGAGCTTGAAATGCTTTTGCAAAAGAAG
CTTCAAGATCCTGAGGTTGACATCCACAAGGAAGGCAAATACCTTATGCTTGCTGTTCAG
GAACTGGTTTCAGGAGATCAGTGTGAGGGAAAGTTTGTGTTTGGTCGTGAAAACAAGAGG
CCTAAAGATTCTAAAGACACTGATAGATTTACAAGGGATGGGACAAACCCAAAGAGTTTG
CTGCAAACCCTAATGATGAGGGCAGGTCACTCCCCTCCCAAGTACAAAACAAAGCATCTA
AAAACAAATGAATTTAGGGCACTTGTAGAGTTCAAGGGAATGCAATTTGTAGGTAAACCA
AAGAGAAACAAAGCTCTTGCAGAAAAGGATGCTGCAATAGAGGCACTAGCATGGTTAACT
CAAACTTCTGAGAAGAATCATGATGAAGATGATAAATCTCCGCCTGATGTCACCGACAAC
ATGCTGAAACTTCTTGGTAAACGCAGGAGATCAAAGCGTCGTTGA

Peptide Sequence

PEP ID

XP_016474116.1
PEP Infomation

PREDICTED: DExH-box ATP-dependent RNA helicase DExH3-like isoform X2 [Nicotiana tabacum]
Sequence

MYRIRIFVGWDSSVGFVDTLLPPRWSNSPTMNMNATTKIIRRGGTMMQRPFDEEEILAVI
KFYYGDKVPAFVWLHYEILQKLVASSSVANIDEWKWKLSLLLRNEKNQEVVSRDKRDRRD
YEQISNLAKRMGLYSEIYGKVVVVSKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQ
EHIDRTQLISGKADNILDGTNSSDMVEDANLDENPDSFLDGSVMEKVLQRRSLRMRNMQR
AWQESPDGNKMLEFRKSLPAFKEKERLLQAIARNQVVVISGETGCGKTTQLPQYILESEI
ESGRGAFCSIICTQPRRISALAVAERVSTERGEPLGDSVGYKVRLEGVKGKNTHLLFCTS
GILLRRLLSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNAE
LFSSYFGGAPMIHIPGFTYPVRAHFLEDLLEITGYKLTSFNQIDDYGQEKMWKTQKQLAP
RKKKNQITALVEDALNKSNFESYSARARDSLACWAPDCIGFNLIEAVLCHICRKERPGAV
LVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKAPQNVRKIVLA
TNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGE
CYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLSAALQPPEPLAVQNA
IQFLKMIGALDENEYLTHLGKFLAILPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDP
FLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQ
AIHSLRKQFIFILKDAGLLDADTATNNKLSYNQSLVRAVICSGLYPGIASVVHRETSMSF
KTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSIVILFGSTLDS
GDTAGHLKMLGGYIEFFMDPTLADCYIKLKEELEMLLQKKLQDPEVDIHKEGKYLMLAVQ
ELVSGDQCEGKFVFGRENKRPKDSKDTDRFTRDGTNPKSLLQTLMMRAGHSPPKYKTKHL
KTNEFRALVEFKGMQFVGKPKRNKALAEKDAAIEALAWLTQTSEKNHDEDDKSPPDVTDN
MLKLLGKRRRSKRR

Transcript Sequence

Gene sequence data has not been registered.